Kapoorlabs - kapoorlabs

Assisting Developmental Biologists with Advanced Computational AI Workflows

Fiji Plugins

Up to date Fiji plugins that we actively support and develop.

Napari Plugins

Our developed and supported Napari plugins for cancer research.

AI based dev-bio workflows

For demonstration of the training datasets, trained models and in production workflow for segmentation and tracking specialized for bio-images click here. For publicly available models click on the link below.

Pre Trained segmentation models (public)

Artificial intelligence

Cell Tracking in 3D using deep learning segmentations

We made a scipy 2021 article about segmentation, tracking and track analysis Article link Live-cell imaging is a highly used technique to study cell migration and dynamics over time. Although many computational tools have been developed during the past years to automatically detect and track cells, they are optimized to detect cell nuclei with similar […]

Artificial intelligence

TrackMate-Oneat: Auto Track correction using deep learning networks

We made a focalplane article https://focalplane.biologists.com/2022/07/04/trackmate-oneat-auto-track-correction-using-deep-lea. During the tracking of motile cells, solving the problem of linking objects between two consecutive timepoints becomes even more complicated, if the cells divide or undergo cell death. In the terms of trajectories, this means the addition of trajectory branches and terminations. However, dividing and dying cells are characteristic […]