Our core service
We collaborate one-on-one with researchers worldwide to build highly customized analysis pipelines for cases not covered by existing image analysis tools, or where uncovering the physics of a developing system requires going beyond standard workflows.
- HPC and storage. We provide in-house HPC and storage to build and train custom 3D segmentation and tracking models. You deposit your raw data on our HPC systems, and we handle processing and model training using our bespoke PyTorch-Lightning–based tools.
- Custom analysis tool development. We bridge the persistent gap between biological systems and the tools of theoretical physics. After segmenting and tracking your data and converting it into Pandas dataframes, we train AI-based inception models to quantify cell fate, and develop code grounded in topological and non-equilibrium statistical physics to extract the underlying physics from your data.
- Paid service model. Our pricing is simple and monthly. After an initial review of your data and a discussion of project goals, we provide a timeline and cost estimate. Once agreed, we take on your data and use our compute and storage resources to deliver the analyzed results.
- Educational activities. Physics and AI are central to everything we do. Our teaching section links to our lectures, tutorials, and books, all developed from those lectures.
विद्या ददाति विनयं विनयाद्याति पात्रताम्।
पात्रत्वात् धनमाप्नोति धनाद्धर्मं ततः सुखम्॥
“Knowledge gives humility, humility brings worthiness, worthiness brings wealth, wealth brings righteousness, and from righteousness, happiness.”
Development of innovative bioimage analysis tools, with focus on physics of developing systems.
Our Signature Workflow for Cell Fate quantification using Morphodynamic Features.
Publications:
2026:
2020-2025:
- Community-developed checklists for publishing images and image analyses (Nature Methods)
- A Dilp8-dependent time window ensures tissue size adjustment in Drosophila (Nature Communications)
- Cortical softening elicits zygotic contractility during mouse preimplantation development (Plos Biology)
- Rapid and robust optogenetic control of gene expression in Drosophila (Developmental Cell)
- Cell Tracking in 3D using deep learning segmentations (Scipy Proceedings 2021)
- SPEN integrates transcriptional and epigenetic control of X-inactivation (Nature)
- Oscillations of MyoD and Hes1 proteins regulate the maintenance of activated muscle stem cells (Developmental Cell)
- MTrack: automated detection, tracking, and analysis of dynamic microtubules (Scientific Reports)
Pure Physics:
- Autoionization in time-dependent density-functional theory (Physical Review A)
- Model atomic systems in intense laser fields. Exact time-dependent density functional and Floquet theory (PhD Thesis, Universität Rostock)
- Periodicity of the time-dependent Kohn-Sham equation and the Floquet theorem (Physical Review A)
- Floquet analysis of real-time wave functions without solving the Floquet equation (Physical Review A)








