Introduction
VollSeg is more than just a single segmentation algorithm; it is a meticulously designed modular segmentation tool tailored to diverse model organisms and imaging methods. While a U-Net might suffice for certain image samples, others might benefit from utilizing StarDist, and some could require a blend of both, potentially coupled with denoising or region of interest models. The pivotal decision left to make is how to select the most appropriate VollSeg configuration for your dataset. This Napari plugin combines different modes for you to try out on your data, once you have found the mode that works for you please use our HPC friendly scripts to compute in batch.
Introduction:
This plugin does Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library. It can visualize the tracks obtained using TrackMate algorithms in Napari, additionally it generates a master xml file that computed additional morphodynamic features of the cells that can then be used to create training data for our inception models.
Introduction
This plugin does segmentation of kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch
